I've removed the trim and the badges from the car and now I am looking at filling the holes left by the mounting pegs.
I've read about a number of ways to fill these. Fiberglass, bondo.
The side trim holes go all the way through the glass, the badge holes do not. I would work the side trim holes from the back, and the badge holes from the front.
The badge holes on the back don't go all the way through and if they did, some are not accessible from the back because of the latch hardware, etc.
My goal for now is just to fill them and cover with touch up paint until I decide on repaint color, probably not for several months.